Can anyone help me trouble-shot? My understanding was that I only needed ifort since it works with gcc, etc.
Configure seems to find everything necessary, but during make, it has trouble with "cfortran.h" - which confuses me.
I can easily make with gcc/gfortran, but my calling program will be compiled with ifort, so I need to build NetCDF with ifort.
(I was able to build OpenMPI3 with ifort/gcc.)
linux-68t00:/usr/local/netcdf-3.6.3 # gcc --version
gcc (SUSE Linux) 6.4.1 20180626 [gcc-6-branch revision 262132]
Copyright (C) 2017 Free Software Foundation, Inc.
linux-68t00:/usr/local/netcdf-3.6.3 # export F90=/home/patti/intel/bin/ifort
linux-68t00:/usr/local/netcdf-3.6.3 # export F77=/home/patti/intel/bin/ifort
linux-68t00:/usr/local/netcdf-3.6.3 # export FC=/home/patti/intel/bin/ifort
linux-68t00:/usr/local/netcdf-3.6.3 # ./configure --prefix /usr/local/netcdf363-ifort
configure: loading site script /usr/share/site/x86_64-unknown-linux-gnu configure: netCDF 3.6.3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes configure: checking user options checking whether CXX is set to ''... no checking whether FC is set to ''... no checking whether F90 is set to ''... no checking whether this is a netCDF-4.x build... no checking whether netCDF extra tests should be run (developers only)... no checking whether documentation is to be installed... no checking whether Fortran compiler(s) should be tested during configure... yes checking whether configure should try to set compiler flags... yes checking whether FFIO will be used... no checking whether to skip C++, F77, or F90 APIs if compiler is broken... yes checking whether only the C library is desired... no checking whether examples should be built... yes checking whether F77 API is desired... yes checking whether F90 API is desired... yes checking whether fortran type sizes should be checked... yes checking whether C API is desired... yes checking where to get netCDF C-only library for separate fortran libraries... checking whether CXX API is desired... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump should be built... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmaks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . checking whether a win32 DLL is desired... no checking whether separate fortran libs are desired... no configure: finding C compiler checking for xlc... no checking for cc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking whether cc understands -c and -o together... yes checking for an ANSI C-conforming const... yes configure: finding Fortran compiler (will not be used if Fortran API is not desired) checking whether we are using the GNU Fortran compiler... no checking whether /home/patti/intel/bin/ifort accepts -g... yes checking whether we are using the GNU Fortran 77 compiler... no checking whether /home/patti/intel/bin/ifort accepts -g... yes configure: setting up Fortran 90 checking for Fortran flag to compile .f90 files... none checking fortran 90 modules inclusion flag... -I checking if Fortran compiler can handle Fortran-90... yes configure: finding C++ compiler (will not be used if C++ API is not desired) checking for cl... no checking for KCC... no checking for CC... no checking for cxx... no checking for cc++... no checking for xlC... no checking for aCC... no checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 configure: setting up libtool checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by cc... /usr/x86_64-suse-linux/bin/ld checking if the linker (/usr/x86_64-suse-linux/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/x86_64-suse-linux/bin/ld option to reload object files... -r checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking how to run the C preprocessor... cc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU Fortran 77 compiler... (cached) no checking whether /home/patti/intel/bin/ifort accepts -g... (cached) yes checking whether we are using the GNU Fortran compiler... (cached) no checking whether /home/patti/intel/bin/ifort accepts -g... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... no checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ld used by c++... /usr/x86_64-suse-linux/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the c++ linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... no checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /home/patti/intel/bin/ifort option to produce PIC... -KPIC checking if /home/patti/intel/bin/ifort PIC flag -KPIC works... no checking if /home/patti/intel/bin/ifort static flag -static works... no checking if /home/patti/intel/bin/ifort supports -c -o file.o... yes checking if /home/patti/intel/bin/ifort supports -c -o file.o... (cached) yes checking whether the /home/patti/intel/bin/ifort linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /home/patti/intel/bin/ifort option to produce PIC... -KPIC checking if /home/patti/intel/bin/ifort PIC flag -KPIC works... no checking if /home/patti/intel/bin/ifort static flag -static works... no checking if /home/patti/intel/bin/ifort supports -c -o file.o... yes checking if /home/patti/intel/bin/ifort supports -c -o file.o... (cached) yes checking whether the /home/patti/intel/bin/ifort linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities checking for a BSD-compatible install... /usr/bin/install -c configure: trying to set fortran flags for this platform configure: trying to set flags for this platform checking if _HPUX_SOURCE should be set... no checking if Solaris -Xa option is needed... CFLAGS=-g -O2 configure: trying to set fortran 90 flags for this platform checking if we need to add to FFLAGS for ifort compiler... FFLAGS=-g checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES= checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... checking CC CFLAGS... cc -g -O2 checking type cc... cc is /usr/bin/cc checking CXX... c++ checking CXXFLAGS... -g -O2 checking type c++... c++ is /usr/bin/c++ checking FC... /home/patti/intel/bin/ifort checking FFLAGS... -g checking type /home/patti/intel/bin/ifort... /home/patti/intel/bin/ifort is /home/patti/intel/bin/ifort checking F90... /home/patti/intel/bin/ifort checking F90FLAGS... checking type /home/patti/intel/bin/ifort... /home/patti/intel/bin/ifort is /home/patti/intel/bin/ifort checking AR... ar checking AR_FLAGS... cru checking type ar... ar is /usr/bin/ar checking NM... /usr/bin/nm -B checking NMFLAGS... checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... yes checking if Fortran "byte" is C "short"... no checking if Fortran "byte" is C "int"... no checking if Fortran "byte" is C "long"... no checking if Fortran "integer*2" is C "short"... yes checking if Fortran "integer*2" is C "int"... no checking if Fortran "integer*2" is C "long"... no checking if Fortran "integer" is C "int"... yes checking if Fortran "real" is C "float"... yes checking if Fortran "doubleprecision" is C "double"... yes checking for Fortran-equivalent to netCDF "byte"... byte checking for Fortran-equivalent to netCDF "short"... integer*2 checking if Fortran 90 compiler capitalizes .mod filenames... no configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for strlcat... no checking for strerror... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether signbit is declared... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 checking for manual-page index command... checking what to call the output of the ftpbin target... binary-netcdf-3.6.3_nc3_/home/patti/intel/bin/ifort_/home/patti/intel/bin/ifort_c++.tar /home/patti/intel/bin/ifort c++ checking binary distribution directory... /home/ftp/pub/binary/dummy_system checking for gawk... (cached) gawk checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes configure: generating header files and makefiles configure: creating ./config.status config.status: creating Makefile config.status: creating man/Makefile config.status: creating man4/Makefile config.status: creating fortran/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen/Makefile config.status: creating nf_test/Makefile config.status: creating cxx/Makefile config.status: creating cxx4/Makefile config.status: creating f90/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/CXX4/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/F77/Makefile config.status: creating win32/Makefile config.status: creating win32/NET/Makefile config.status: creating win32/NET/libsrc/Makefile config.status: creating win32/NET/ncdump/Makefile config.status: creating win32/NET/ncgen/Makefile config.status: creating win32/NET/examples/Makefile config.status: creating win32/NET/nctest/Makefile config.status: creating win32/NET/nc_test/Makefile config.status: creating config.h config.status: creating fortran/nfconfig1.inc config.status: executing depfiles commands config.status: executing libtool commands
linux-68t00:/usr/local/netcdf-3.6.3 # make
make all-recursive
make[1]: Entering directory '/usr/local/netcdf-3.6.3'
Making all in f90
make[2]: Entering directory '/usr/local/netcdf-3.6.3/f90'
/bin/sh ../libtool --mode=compile /home/patti/intel/bin/ifort -I../libsrc -I. -g -c -o typeSizes.lo typeSizes.f90
libtool: compile: /home/patti/intel/bin/ifort -I../libsrc -I. -g -c typeSizes.f90 -o typeSizes.o
/bin/sh ../libtool --mode=compile /home/patti/intel/bin/ifort -I../libsrc -I. -g -c -o netcdf.lo netcdf.f90
libtool: compile: /home/patti/intel/bin/ifort -I../libsrc -I. -g -c netcdf.f90 -o netcdf.o
/bin/sh ../libtool --mode=link /home/patti/intel/bin/ifort -I../libsrc -I. -g -o libnetcdff90.la typeSizes.lo netcdf.lo
libtool: link: ar cru .libs/libnetcdff90.a typeSizes.o netcdf.o
libtool: link: ranlib .libs/libnetcdff90.a
libtool: link: ( cd ".libs"&& rm -f "libnetcdff90.la"&& ln -s "../libnetcdff90.la""libnetcdff90.la" )
make[2]: Leaving directory '/usr/local/netcdf-3.6.3/f90'
Making all in fortran
make[2]: Entering directory '/usr/local/netcdf-3.6.3/fortran'
echo '! NetCDF-3.'> netcdf.inc
cat ../fortran/netcdf3.inc >> netcdf.inc
echo >> netcdf.inc
echo '! NetCDF-2.'>> netcdf.inc
cat ../fortran/netcdf2.inc >> netcdf.inc
make all-am
make[3]: Entering directory '/usr/local/netcdf-3.6.3/fortran'
depbase=`echo fort-attio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -g -O2 -MT fort-attio.lo -MD -MP -MF $depbase.Tpo -c -o fort-attio.lo fort-attio.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -g -O2 -MT fort-attio.lo -MD -MP -MF .deps/fort-attio.Tpo -c fort-attio.c -o fort-attio.o
In file included from ncfortran.h:12:0,
from fort-attio.c:7:
cfortran.h:138:3: error: #error "cfortran.h: Can't find your environment among: - MIPS cc and f77 2.0. (e.g. Silicon Graphics, DECstations, ...) - IBM AIX XL C and FORTRAN Compiler/6000 Version 01.01.0000.0000 - VAX VMS CC 3.1 and FORTRAN 5.4. - Alpha VMS DEC C 1.3 and DEC FORTRAN 6.0. - Alpha OSF DEC C and DEC Fortran for OSF/1 AXP Version 1.2 - Apollo DomainOS 10.2 (sys5.3) with f77 10.7 and cc 6.7. - CRAY - NEC SX-4 SUPER-UX - CONVEX - Sun - PowerStation Fortran with Visual C++ - HP9000s300/s700/s800 Latest test with: HP-UX A.08.07 A 9000/730 - LynxOS: cc or gcc with f2c. - VAXUltrix: vcc,cc or gcc with f2c. gcc or cc with f77. - f77 with vcc works; but missing link magic for f77 I/O. - NO fort. None of gcc, cc or vcc generate required names. - f2c : Use #define f2cFortran, or cc -Df2cFortran - NAG f90: Use #define NAGf90Fortran, or cc -DNAGf90Fortran - Absoft UNIX F77: Use #define AbsoftUNIXFortran or cc -DAbsoftUNIXFortran - Absoft Pro Fortran: Use #define AbsoftProFortran - Portland Group Fortran: Use #define pgiFortran - PathScale Fortran: Use #define PATHSCALE_COMPILER"
#error "cfortran.h: Can't find your environment among:\
^~~~~
make[3]: *** [Makefile:426: fort-attio.lo] Error 1
make[3]: Leaving directory '/usr/local/netcdf-3.6.3/fortran'
make[2]: *** [Makefile:298: all] Error 2
make[2]: Leaving directory '/usr/local/netcdf-3.6.3/fortran'
make[1]: *** [Makefile:362: all-recursive] Error 1
make[1]: Leaving directory '/usr/local/netcdf-3.6.3'
make: *** [Makefile:292: all] Error 2